Code Ocean makes science move faster
Code Ocean is the best way to standardize research workflow, plus track and reproduce all computations and discoveries with:
-Out-of-the-box popular computational tools
-Easy access to any computing resource and data storage
-Integrated collaboration and access control
-Centralized repository to keep projects and results organized
Operating as usual
Today at 12pm ET, join our Head of Computational Research Frank Zappulla as he walks you through our newest addition to the lab: Pipelines. We are excited to share what we've been up to and hear feedback! Register Here:
https://hubs.ly/Q01kwStd0
Join us tomorrow at 12pm ET. We’ll show you how our new visual pipeline editor lets you organize complex code and data flows and share them with colleagues, either as automatically generated Nextflow scripts or published high-level tools
https://hubs.ly/Q01kwWC00
Like many of our users, was introduced to CO when publishing with one of our partner journals. He immediately saw the value of our platform, and remains a power user and advocate. Check out his work in our library:
https://hubs.ly/Q01k4_J20
Want to learn how you can use pipelines to optimize your computational research process? Join our August 25th webinar for a demo of how you can simplify creating and sharing complex workflows for your organization. Register now:
https://hubs.ly/Q01jYZtP0
We enjoy seeing database aggregations done well and with a clear biological impact in mind. Nahiduzzaman et al propose a lightweight convolutional neural network (CNN) that detects pneumonia, COVID19, cardiomegaly, lung opacity, and pleural from digital chest x-ray images.
https://hubs.ly/Q01k3zzw0
If you’re working in image-based cell profiling and looking for a new method to handle dense regions, check out Cell-UNet. Vizcaino et al highlight their image treatment process, applicable to your DL model of choice.
https://hubs.ly/Q01jMcyH0
Your computational research is complex enough, so isn’t there a way to make the process simpler? Join our August 25th webinar to learn about the Code Ocean automated pipeline tool that any collaborator can use. No code required! Register now:
https://hubs.ly/Q01jMd8W0
Mi et al apply graph-embedded methodology to smartly imaged patient-derived TMA’s, capturing a critical view of the tumor microenvironment under treatment. Their methods and data are organized and ready for exploration at Code Ocean
https://hubs.ly/Q01jnQwh0
The out-of-distribution problem is one of the trickiest in . A new Capsule from He et al. shows a solution for drug response data: a Context-aware Deconfounding Autoencoder (CODE-AE) for extracting biological signals masked by context-specific patterns and confounders.
https://hubs.ly/Q01jnPgZ0
Current protocols to study the role of B cells in autoimmune diseases are time-consuming and contain repetitive steps -- some of which can be assisted with the help of software automation. This has led to the development of Brain Antibody Sequence Evaluation (BASE), an easy-to-use software for complete data analysis in single-cell immunoglobulin cloning. In this capsule, we provide a validation of BASE functionality:
https://hubs.ly/Q01hWxsT0
What if researchers could leverage data more efficiently to find new cures and solutions? Imagine the biologists, clinicians, pharmacologists, and computer scientists all working together collaboratively. In order to achieve that, you'd need to have a common framework that's easy for everyone to use. And that's precisely what makes Code Ocean so valuable. Read our blog to learn more: https://hubs.ly/Q01hxdjR0
How does maternal parity affect the gut microbiome of mammals during gestation and early infancy?
After collecting f***l samples from 34 pregnant pigs and their piglets, scientists have discovered there are significant differences in the relative abundance of key microbial species.
Researchers have concluded that maternal parity affects the composition of the early infant gut microbiome. https://hubs.ly/Q01hx6mh0
Today, Code Ocean is thrilled to announce seasoned technology executive Andy Keane as our Chief Operating Officer, a major step forward for our company.
Our CEO Simon Adar shares, “Andy’s knowledge and leadership capabilities are already having a positive impact since he joined Code Ocean. He’s working across all critical elements of our business in a way that’s galvanizing the team and creating a sharp focus for the company’s business ex*****on and growth.”
Read the press release: https://hubs.ly/Q01fS0hS0
NEW YORK, June 29, 2022…Code Ocean, the developer of a first-of-its-kind, computational-research laboratory cloud platform for scientific collaboration and discovery, today announced seasoned technology executive Andy Keane as the company’s Chief Operating Officer. “Andy’s knowledge and lead...
A major step forward for Code Ocean: We recently announced a major release of our computational lab that adds Visual Pipeline Editor, Remote Access API, and Visual Studio Code, alongside workflow improvements and performance enhancements. We are excited about these changes as they move forward our mission to empower computational scientists, across disciplines, to focus on science in a digital laboratory.
Read the press release: https://hubs.ly/Q01dz9Gf0
Code Ocean Computational Lab Release 2.0 adds Visual Pipeline Editor, Remote Access API, Visual Studio Code, alongside workflow improvements and performance enhancements New York, NY – June 14, 2022 – Code Ocean, the developer of a first-of-its-kind, computational- research laboratory cloud p...
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